Multifractals in Ecology Using R - Day 2

Characteristic features of fractals

  • Mandelbrot Originally defined fractals as sets that have fractal dimension strictly greater than its topological dimension.

  • There is no hard and fast definition but a list of properties.

  • We refer to F as fractal if:

    1. F has a fine structure: i.e. detail on small scales.

    2. F is too irregular to be described by traditional geometrical language

    3. F has some form of self-similarity, perhaps approximate or statistical

    4. Usually the fractal dimension of F is greater than its topological dimension

Random walks

  • Random walk (RW) is a stochastic process in which an object moves in a space by performing random jumps

  • We can see that the enlarged view of a small part of the trajectory looks similar to the original, is fractal.

  • The pattern displayed by the one dimensional RW is not self-similar but self-affine because the time and space dimensions do not scale in the same way

Fractal time series

  • Fractal properties in time series can be analyzed by means of Hurst’s Rescaled Range Analysis

    Let us consider a time series that can be: the number of extinctions of a group of organism or a particular population or the discharge of a river, etc.

    \(X_i\) with \(i=1,2,3,…,T\)

    The average of \(X_i\) over \(T\) time steps will be \(< X >_T = \left( \sum_{i} X_t \right)/T\)

    The departure from the average over a t-year time horizont is given by:

    \[X(t,T) = \sum_{i=1}^{t} [X_i - < X >_T ] = \left\{ \sum_{i=1}^{T} X_i \right\} - t < X >_T\]

    \(X(t,T)\) is usually calculated dividing the time series in \(M\) segments of size \(T\).

  • What is the value of \(X(T,T)\) ?

Rescaled Range Analysis

  • We need to calculate two more quantities from the previous :

    The standard deviation \(S(T) = \left[ (< X_t - <X>_T >)^2 \right]^{1/2}\)

    The range \(R(T) = \max_{1 \le t \le T} X(t,T) - \min_{1 \le t \le T} X(t,T)\)

  • The rescaled range is: \(F(T)=R(T)/S(T)\)

  • Calculate \(F(T)\) using \(T=5\) and the following series

    3  4  9  2  1  7  8  2  2  9 
  • When the values of the time series are uncorrelated \(F(T) \propto T^{1/2}\), which is called white noise. The best predictor is the last measured value.

  • Hurst found a more general scaling relation \(F(T) \propto T^{H}\).

    for the natural systems he analyzed \(H > 1/2\)

    it can be shown (easily) than the fractal dimension is related:

    \[D = 2 - H\]

  • When the Hurst exponent is greater than 1/2 the system shows persistence on all time scales. An increasing trend in the past implies an increasing trend in the future.

    If \(H < 1/2\) an increase in the past implies a decrease in the future, the system shows antipersistence.

Papers

We will analyze the data from the paper:

  1. Meltzer MI, Hastings HM (1992) The use of fractals to assess the ecological impact of increased cattle population: case study from the Runde Communal Land, Zimbabwe. Journal of Applied Ecology 29: 635–646.

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