Plot ecological network organized by trophic level, with node size determined by the node degree, and modules.

Usage

plot_troph_level(
  g,
  vertexLabel = FALSE,
  vertexSizeFactor = 5,
  vertexSizeMin = 5,
  tk = FALSE,
  modules = FALSE,
  lMat = NULL,
  weights = NA,
  community_obj = NULL,
  bpal = NULL,
  maxTL = NULL,
  ...
)

Arguments

vertexLabel: logical plot vertex labels
vertexSizeFactor: numeric factor to determine the size of the label with degree
vertexSizeMin: numeric determine the minimum size of the label
tk: TRUE generate an interactive plot using tkplot and returns a matrix with coordinates from igraph::tkplot.getcoords()
modules: if TRUE plot modules in the x axis, obtained with the cluster spinglass algorithm
lMat: Matrix of postions for the nodes
weights: The weights of the edges for the igraph::cluster_spinglass() community detection, either a numeric vector, NULL, or NA. if NULL and the network has a 'weight' attribute then that will be used, if NA then the 'weight' attributte is not considered.
community_obj: Insteado of calculating modules/communities with cluster spinglass take a community object
bpal: if NULL it uses the "RdYlGn" RColorBrewer palette, else must be a vector of colors of length 11.
maxTL: maximum trophic level to draw y-axis
...: Addittional parameters to the plot function
ig: igraph object

Value

returns a plot and if tk==TRUE returns a layout matrix

Examples


plot_troph_level(netData[[1]])